STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_71930Thioredoxin; Fragment. (107 aa)    
Predicted Functional Partners:
ROP_38820
Putative two-component system thioredoxin reductase.
  
 0.971
trxB
Thioredoxin reductase.
  
 0.960
ROP_65570
Putative amino acid lyase.
  
 
 0.912
ROP_72220
Putative amino acid lyase.
  
 
 0.912
egtE
Putative aminotransferase; Probably catalyzes the conversion of hercynylcysteine sulfoxide to ergothioneine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. EgtE subfamily.
  
 
  0.908
sufS
Cysteine desulfurase/selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
  0.908
trxA-3
Thioredoxin; Belongs to the thioredoxin family.
  
  
 
0.907
ROP_44260
Putative xanthine dehydrogenase.
    
  0.904
ROP_71910
Thioredoxin; Fragment.
 
     0.878
ROP_71920
Putative transposase for insertion sequence element.
     
 0.791
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.