STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBEV_2195Putative pentose isomerase; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, the annotation from RAST was retained, the same initiation site was predicted by BASYS and RAST. (236 aa)    
Predicted Functional Partners:
tkt-2
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
 0.961
tkt-1
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
 0.948
rpiA1
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
 0.939
xylB
Xylulose kinase; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the same initiation site was predicted by BASYS and RAST.
 
  
 0.928
BBEV_0174
Ribose 5-phosphate isomerase B; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, the annotation from RAST was retained, the same initiation site was predicted by BASYS and RAST.
  
 
 0.925
araD
L-ribulose-5-phosphate 4-epimerase; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the initiation site predicted by RAST was supported by BLASTP against NCBI NR.
    
 0.917
rpe
Ribulose-phosphate 3-epimerase; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the same initiation site was predicted by BASYS and RAST; Belongs to the ribulose-phosphate 3-epimerase family.
  
  
 
0.911
araB
Ribulokinase; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the same initiation site was predicted by BASYS and RAST.
 
   
 0.905
hxlA
3-hexulose-6-phosphate synthase; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, the annotation from BASYS was retained, the initiation site predicted by RAST was supported by BLASTP against NCBI NR.
    
 0.901
hxlB
3-hexulose-6-phosphate isomerase; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, the annotation from BASYS was retained, the same initiation site was predicted by BASYS and RAST.
 
  
 0.866
Your Current Organism:
Bacillus beveridgei
NCBI taxonomy Id: 632773
Other names: B. beveridgei, Bacillus beveridgei Baesman et al. 2010, Bacillus sp. MLTeJB, DSM 22320, strain MLTeJB
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.