node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BBEV_0238 | dnaN | BBEV_0238 | BBEV_0003 | HRDC domain protein; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the initiation site predicted by RAST was supported by BLASTP against NCBI NR. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.566 |
BBEV_0238 | mutL | BBEV_0238 | BBEV_1748 | HRDC domain protein; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the initiation site predicted by RAST was supported by BLASTP against NCBI NR. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.743 |
BBEV_0238 | pcrA | BBEV_0238 | BBEV_2585 | HRDC domain protein; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the initiation site predicted by RAST was supported by BLASTP against NCBI NR. | ATP-dependent DNA helicase UvrD/PcrA; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the same initiation site was predicted by BASYS and RAST. | 0.762 |
BBEV_0238 | recA | BBEV_0238 | BBEV_1760 | HRDC domain protein; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the initiation site predicted by RAST was supported by BLASTP against NCBI NR. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.822 |
BBEV_2583 | ligA | BBEV_2583 | BBEV_2584 | Putative pheromone precursor lipoprotein CamS; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, the annotation from RAST was retained, the initiation site predicted by RAST was supported by BLASTP against NCBI NR. | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.864 |
BBEV_2583 | pcrA | BBEV_2583 | BBEV_2585 | Putative pheromone precursor lipoprotein CamS; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, the annotation from RAST was retained, the initiation site predicted by RAST was supported by BLASTP against NCBI NR. | ATP-dependent DNA helicase UvrD/PcrA; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the same initiation site was predicted by BASYS and RAST. | 0.852 |
BBEV_2583 | pcrB | BBEV_2583 | BBEV_2586 | Putative pheromone precursor lipoprotein CamS; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, the annotation from RAST was retained, the initiation site predicted by RAST was supported by BLASTP against NCBI NR. | (S)-3-O-geranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes in vivo the transfer of the heptaprenyl moiety of heptaprenyl pyrophosphate (HepPP; 35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond- formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales. | 0.668 |
dnaN | BBEV_0238 | BBEV_0003 | BBEV_0238 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | HRDC domain protein; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the initiation site predicted by RAST was supported by BLASTP against NCBI NR. | 0.566 |
dnaN | mutL | BBEV_0003 | BBEV_1748 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.956 |
dnaN | pcrA | BBEV_0003 | BBEV_2585 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | ATP-dependent DNA helicase UvrD/PcrA; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the same initiation site was predicted by BASYS and RAST. | 0.897 |
dnaN | recA | BBEV_0003 | BBEV_1760 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.841 |
dnaN | recQ | BBEV_0003 | BBEV_2372 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | ATP-dependent DNA helicase RecQ; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the initiation site predicted by RAST was supported by BLASTP against NCBI NR. | 0.566 |
helD | pcrA | BBEV_2453 | BBEV_2585 | ATP-dependent DNA helicase rep; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the same initiation site was predicted by BASYS and RAST. | ATP-dependent DNA helicase UvrD/PcrA; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the same initiation site was predicted by BASYS and RAST. | 0.922 |
ligA | BBEV_2583 | BBEV_2584 | BBEV_2583 | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | Putative pheromone precursor lipoprotein CamS; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, the annotation from RAST was retained, the initiation site predicted by RAST was supported by BLASTP against NCBI NR. | 0.864 |
ligA | pcrA | BBEV_2584 | BBEV_2585 | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | ATP-dependent DNA helicase UvrD/PcrA; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the same initiation site was predicted by BASYS and RAST. | 0.953 |
ligA | pcrB | BBEV_2584 | BBEV_2586 | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | (S)-3-O-geranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes in vivo the transfer of the heptaprenyl moiety of heptaprenyl pyrophosphate (HepPP; 35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond- formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales. | 0.730 |
ligA | recA | BBEV_2584 | BBEV_1760 | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.400 |
ligA | uvrB | BBEV_2584 | BBEV_0559 | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.477 |
mutL | BBEV_0238 | BBEV_1748 | BBEV_0238 | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | HRDC domain protein; Automated annotation was performed by BASYS (https://www.basys.ca) and RAST (http://rast.nmpdr.org) then manually curated. The gene product was detected by both BASYS and RAST, with equivalent annotation, the initiation site predicted by RAST was supported by BLASTP against NCBI NR. | 0.743 |
mutL | dnaN | BBEV_1748 | BBEV_0003 | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.956 |