STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET46302.1Thiol oxidoreductase containing 2 cytochrome c heme-binding sites; Identified by match to protein family HMM PF06537. (516 aa)    
Predicted Functional Partners:
EET49820.1
Identified by match to protein family HMM PF09375; imelysin. metallo peptidase. merops family m75.
    0.990
EET47296.1
Imelysin superfamily protein; Identified by match to protein family HMM PF09375.
 
  
 0.987
EET47318.1
Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF07433.
 
  
 0.983
EET47734.1
Putative bacterioferritin-associated ferredoxin.
 
    0.893
bfr
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
       0.821
EET48859.1
Conserved hypothetical protein.
 
     0.806
EET47688.1
Conserved hypothetical protein.
       0.627
EET48309.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.621
EET47037.1
Conserved hypothetical protein.
   
    0.457
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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