STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR02630; Belongs to the xylose isomerase family. (433 aa)    
Predicted Functional Partners:
xylB
Xylulokinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
 
 
 0.998
EET48659.1
D-arabinitol 4-dehydrogenase; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125; Belongs to the mannitol dehydrogenase family.
    
 0.925
EET47564.1
ROK family protein; Identified by match to protein family HMM PF00480.
 
  
 0.890
EET47773.1
Inner-membrane translocator; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.876
EET46737.1
Alcohol dehydrogenase GroES domain protein; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.
     
 0.875
EET46361.1
Fructokinase; Identified by match to protein family HMM PF00294.
     
 0.872
glk
Glucokinase; Identified by match to protein family HMM PF02685; Belongs to the bacterial glucokinase family.
     
 0.866
EET48881.1
Ribose import ATP-binding protein RbsA; Identified by match to protein family HMM PF00005.
 
  
 0.844
EET49341.1
D-xylose-binding periplasmic protein.
 
  
 0.793
EET47689.1
Beta-galactosidase; Identified by match to protein family HMM PF00232; match to protein family HMM TIGR03356.
    
 0.698
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.