STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET47876.1Conserved domain protein; Identified by match to protein family HMM PF06945. (77 aa)    
Predicted Functional Partners:
EET47152.1
Cytochrome c-type biogenesis protein CycH; Identified by match to protein family HMM TIGR03142.
 
   
 0.884
EET46341.1
Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.860
EET49442.1
Conserved hypothetical protein.
  
     0.739
EET49323.1
Conserved hypothetical protein.
  
     0.630
EET46430.1
Sarcosine oxidase subunit beta; Identified by match to protein family HMM PF01266; match to protein family HMM TIGR01373.
       0.569
EET48396.1
Transcriptional regulator, XRE family; Identified by match to protein family HMM PF01381.
  
     0.550
EET46665.1
Sarcosine oxidase, delta subunit, heterotetrameric; Identified by match to protein family HMM PF04267.
 
     0.494
EET48498.1
Conserved hypothetical protein.
  
     0.481
EET48119.1
2'-deoxycytidine 5'-triphosphate deaminase; Identified by match to protein family HMM PF06559.
  
     0.415
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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