STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET47885.1Oligopeptide/dipeptide ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409. (553 aa)    
Predicted Functional Partners:
EET48441.1
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.952
EET49266.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.
 
 0.946
EET47106.1
Glutathione import ATP-binding protein GsiA; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.940
EET49226.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528; overlaps another CDS with the same product name.
 0.716
EET48991.1
Oligopeptide transport system permease protein AppB; Identified by match to protein family HMM PF00528.
 0.692
EET46565.1
Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
  
 0.687
EET48990.1
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
  
     0.669
EET46880.1
Fatty acid desaturase domain protein; Identified by match to protein family HMM PF00487.
  
     0.666
EET47455.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528; overlaps another CDS with the same product name.
 
 0.649
EET46767.1
Oligopeptide transport system permease protein AppC; Identified by match to protein family HMM PF00528.
 
 0.641
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.