STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET46946.1Lactose transport ATP-binding protein LacK; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily. (367 aa)    
Predicted Functional Partners:
EET47518.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.
  0.955
EET46543.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.
 
  0.954
EET49247.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528; overlaps another CDS with the same product name.
 
  0.896
EET48906.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528; overlaps another CDS with the same product name.
  
  0.884
EET49591.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.
  
  0.877
EET48035.1
Lipid A export ATP-binding/permease protein MsbA; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     
0.873
EET48474.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.
  0.862
EET49211.1
Extracellular solute-binding protein, family 1; Identified by match to protein family HMM PF01547.
 
  0.856
EET47065.1
ABC transporter permease protein; Identified by match to protein family HMM PF00528.
  
  0.851
EET49146.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.
  
  0.847
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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