STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET47553.1Alcohol dehydrogenase; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823. (327 aa)    
Predicted Functional Partners:
EET48332.1
Amino acid adenylation domain protein, putative; Identified by match to protein family HMM PF00975.
  
 
 0.903
EET48020.1
Fatty acid oxidation complex subunit alpha; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737.
  
 0.896
EET49107.1
Phosphate acetyltransferase; Identified by match to protein family HMM PF01515.
  
  
 0.877
EET46373.1
6-phosphogluconate dehydrogenase, NAD-binding; Identified by match to protein family HMM PF03446.
  
  
  0.875
mmsA
Methylmalonate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722.
   
  0.873
gltA
Citrate (Si)-synthase; Identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798; Belongs to the citrate synthase family.
   
  0.866
EET47456.1
Probable enoyl-CoA hydratase PaaG; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.865
EET49607.1
propionyl-CoA carboxylase beta chain; Identified by match to protein family HMM PF01039.
     
 0.865
sucB
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
    
 0.859
EET47154.1
methylcrotonoyl-CoA carboxylase subunit alpha; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443.
     
 0.858
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.