STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET47117.1C-type cytochrome biogenesis protein; Identified by match to protein family HMM PF02683. (250 aa)    
Predicted Functional Partners:
EET47702.1
Thiol:disulfide interChange protein TlpA; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.
 
  
 0.807
EET49891.1
Thiol:disulfide interchange protein CycY; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385.
 
  
 0.788
ccmC
Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
  
  
 0.762
EET46427.1
Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
 
   
 0.727
EET49131.1
Conserved hypothetical protein.
       0.680
EET47481.1
Sulfurtransferase TusA; Identified by match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family.
 
     0.680
EET48752.1
Identified by match to protein family HMM PF00067.
       0.629
EET48989.1
Cytochrome c-type biogenesis protein; Possible subunit of a heme lyase.
     
 0.548
ccmF
Cytochrome c-type biogenesis protein CcmF; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353.
     
 0.548
ccmE
cytoChrome c-type biogenesis protein CcmE 1; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
     
 0.526
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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