STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET47678.1Identified by match to protein family HMM PF01594. (353 aa)    
Predicted Functional Partners:
EET46831.1
Chromosomal replication initiator, DnaA; Identified by match to protein family HMM PF00308; Belongs to the DnaA family.
  
 0.976
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
       0.778
EET47267.1
Phosphatase, Ppx/GppA family; Identified by match to protein family HMM PF02541.
       0.778
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro); Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily.
       0.596
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
  
     0.502
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
 
    0.496
EET49349.1
beta-Ig-H3/fasciclin; Identified by match to protein family HMM PF02469.
       0.481
EET48183.1
ATP-dependent DNA helicase RecG; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336.
 
     0.434
flgG
Flagellar basal-body rod protein FlgG; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02488; match to protein family HMM TIGR03506; Belongs to the flagella basal body rod proteins family.
    
   0.434
flgF
Flagellar basal-body rod protein FlgF; Identified by match to protein family HMM TIGR02490; match to protein family HMM TIGR03506; Belongs to the flagella basal body rod proteins family.
    
   0.434
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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