EET49607.1 protein (Thalassobium sp. R2A62) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EET49607.1

propionyl-CoA carboxylase beta chain; Identified by match to protein family HMM PF01039. (510 aa)

Predicted Functional Partners:

accC

0.999

EET47154.1

0.999

mce

0.979

EET48020.1

0.965

pyc

0.955

EET48332.1

0.939

EET49866.1

0.916

EET49139.1

0.913

gltA

0.899

EET46642.1

0.897

Your Current Organism:

Thalassobium sp. R2A62

NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EET46642.1	EET47154.1	TR2A62_1191	TR2A62_1401	isovaleryl-CoA dehydrogenase 2; Identified by match to protein family HMM PF02770; match to protein family HMM PF02771.	methylcrotonoyl-CoA carboxylase subunit alpha; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443.	0.599
EET46642.1	EET48020.1	TR2A62_1191	TR2A62_3438	isovaleryl-CoA dehydrogenase 2; Identified by match to protein family HMM PF02770; match to protein family HMM PF02771.	Fatty acid oxidation complex subunit alpha; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737.	0.960
EET46642.1	EET48332.1	TR2A62_1191	TR2A62_2360	isovaleryl-CoA dehydrogenase 2; Identified by match to protein family HMM PF02770; match to protein family HMM PF02771.	Amino acid adenylation domain protein, putative; Identified by match to protein family HMM PF00975.	0.695
EET46642.1	EET49139.1	TR2A62_1191	TR2A62_0179	isovaleryl-CoA dehydrogenase 2; Identified by match to protein family HMM PF02770; match to protein family HMM PF02771.	3-hydroxyacyl-CoA dehydrogenase NAD-binding; Identified by match to protein family HMM PF00378; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	0.967
EET46642.1	EET49607.1	TR2A62_1191	TR2A62_1406	isovaleryl-CoA dehydrogenase 2; Identified by match to protein family HMM PF02770; match to protein family HMM PF02771.	propionyl-CoA carboxylase beta chain; Identified by match to protein family HMM PF01039.	0.897
EET47154.1	EET46642.1	TR2A62_1401	TR2A62_1191	methylcrotonoyl-CoA carboxylase subunit alpha; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443.	isovaleryl-CoA dehydrogenase 2; Identified by match to protein family HMM PF02770; match to protein family HMM PF02771.	0.599
EET47154.1	EET48020.1	TR2A62_1401	TR2A62_3438	methylcrotonoyl-CoA carboxylase subunit alpha; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443.	Fatty acid oxidation complex subunit alpha; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737.	0.920
EET47154.1	EET48332.1	TR2A62_1401	TR2A62_2360	methylcrotonoyl-CoA carboxylase subunit alpha; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443.	Amino acid adenylation domain protein, putative; Identified by match to protein family HMM PF00975.	0.890
EET47154.1	EET49139.1	TR2A62_1401	TR2A62_0179	methylcrotonoyl-CoA carboxylase subunit alpha; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443.	3-hydroxyacyl-CoA dehydrogenase NAD-binding; Identified by match to protein family HMM PF00378; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	0.751
EET47154.1	EET49607.1	TR2A62_1401	TR2A62_1406	methylcrotonoyl-CoA carboxylase subunit alpha; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443.	propionyl-CoA carboxylase beta chain; Identified by match to protein family HMM PF01039.	0.999
EET47154.1	EET49866.1	TR2A62_1401	TR2A62_1161	methylcrotonoyl-CoA carboxylase subunit alpha; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443.	biotin-(acetyl-CoA-carboxylase) ligase; Identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121.	0.918
EET47154.1	gltA	TR2A62_1401	TR2A62_0994	methylcrotonoyl-CoA carboxylase subunit alpha; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443.	Citrate (Si)-synthase; Identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798; Belongs to the citrate synthase family.	0.878
EET47154.1	mce	TR2A62_1401	TR2A62_3366	methylcrotonoyl-CoA carboxylase subunit alpha; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443.	methylmalonyl-CoA epimerase; Identified by match to protein family HMM PF00903; match to protein family HMM TIGR03081.	0.962
EET47154.1	pyc	TR2A62_1401	TR2A62_1273	methylcrotonoyl-CoA carboxylase subunit alpha; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.775
EET48020.1	EET46642.1	TR2A62_3438	TR2A62_1191	Fatty acid oxidation complex subunit alpha; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737.	isovaleryl-CoA dehydrogenase 2; Identified by match to protein family HMM PF02770; match to protein family HMM PF02771.	0.960
EET48020.1	EET47154.1	TR2A62_3438	TR2A62_1401	Fatty acid oxidation complex subunit alpha; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737.	methylcrotonoyl-CoA carboxylase subunit alpha; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443.	0.920
EET48020.1	EET48332.1	TR2A62_3438	TR2A62_2360	Fatty acid oxidation complex subunit alpha; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737.	Amino acid adenylation domain protein, putative; Identified by match to protein family HMM PF00975.	0.937
EET48020.1	EET49139.1	TR2A62_3438	TR2A62_0179	Fatty acid oxidation complex subunit alpha; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737.	3-hydroxyacyl-CoA dehydrogenase NAD-binding; Identified by match to protein family HMM PF00378; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	0.945
EET48020.1	EET49607.1	TR2A62_3438	TR2A62_1406	Fatty acid oxidation complex subunit alpha; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737.	propionyl-CoA carboxylase beta chain; Identified by match to protein family HMM PF01039.	0.965
EET48020.1	accC	TR2A62_3438	TR2A62_0159	Fatty acid oxidation complex subunit alpha; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737.	acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	0.751