STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET46557.1Conserved hypothetical protein; Identified by match to protein family HMM TIGR03643. (71 aa)    
Predicted Functional Partners:
EET47731.1
Identified by match to protein family HMM PF03109.
 
     0.817
EET49452.1
Dimethylglycine dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; match to protein family HMM PF08669; Belongs to the GcvT family.
       0.592
EET48997.1
Phage integrase; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.
  
     0.556
EET46592.1
Conserved hypothetical protein.
  
     0.520
EET47451.1
Conserved hypothetical protein.
  
     0.441
EET49227.1
Conserved hypothetical protein.
  
     0.433
EET46944.1
Transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
       0.423
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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