STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET48339.12-dehydro-3-deoxyglucarate aldolase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. (256 aa)    
Predicted Functional Partners:
hpaH
2-oxo-hepta-3-ene-1,7-dioic acid hydratase; Identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312.
 
 0.912
EET48397.1
Aldehyde-alcohol dehydrogenase.
  
 
  0.787
EET49044.1
Xylose isomerase domain protein TIM barrel; Identified by match to protein family HMM PF01261.
    
  0.784
EET49278.1
Probable acetolactate synthase large subunit; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.
       0.742
EET48834.1
4-hydroxyphenylpyruvate dioxygenase; Identified by match to protein family HMM PF00903; match to protein family HMM PF01261.
    
  0.631
EET49641.1
Tripartite ATP-independent periplasmic transporter, DctQ component.
       0.555
EET48618.1
N-acetylneuraminic acid transporter; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
       0.555
EET47798.1
Citrate synthase.
       0.555
hpcD
5-carboxymethyl-2-hydroxymuconate delta isomerase; Identified by match to protein family HMM PF02962.
 
  
 0.536
EET46294.1
Trap dicarboxylate transporter- dctp subunit; Identified by match to protein family HMM PF03480.
       0.511
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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