STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET46601.1Beta-lactamase; Identified by match to protein family HMM PF00144. (386 aa)    
Predicted Functional Partners:
EET47264.1
Flavin-containing monooxygenase; Identified by match to protein family HMM PF00743.
    
  0.847
EET48201.1
Conserved hypothetical protein.
       0.821
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.792
EET48332.1
Amino acid adenylation domain protein, putative; Identified by match to protein family HMM PF00975.
  
  
 0.765
EET48571.1
Beta-hexosaminidase; Identified by match to protein family HMM PF00933.
  
 
 0.686
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
       0.670
dacB
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666.
    
 0.560
EET49487.1
C-5 sterol desaturase; Identified by match to protein family HMM PF04116.
  
     0.536
EET46787.1
N-acetylmuramoyl-L-alanine amidase AmiD; Identified by match to protein family HMM PF01510.
     
 0.468
EET49489.1
Negative transcriptional regulator; Overlaps another CDS with the same product name.
  
     0.452
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.