STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET48315.1Lipoprotein-releasing system ATP-binding protein LolD 2; Identified by match to protein family HMM PF00005. (223 aa)    
Predicted Functional Partners:
EET47745.1
ABC transporter, membrane spanning protein; Identified by match to protein family HMM PF02687.
  
 0.999
EET48650.1
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.963
EET49801.1
Lipoprotein releasing system transmembrane protein LolE; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212.
 
 0.962
EET49011.1
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
  
 
 0.959
EET48624.1
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.930
EET47097.1
Oligopeptide transport ATP-binding protein AppD; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
     
0.899
EET47036.1
acyl-CoA thioesterase I; Identified by match to protein family HMM PF00657.
 
     0.864
EET46520.1
ABC-type antimicrobial peptide transport system, permease component; Identified by match to protein family HMM PF02687.
 
 0.854
EET46767.1
Oligopeptide transport system permease protein AppC; Identified by match to protein family HMM PF00528.
 
 
    0.807
EET47835.1
Conserved hypothetical protein.
       0.773
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.