STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET49755.1Rb142; Identified by match to protein family HMM PF06082. (706 aa)    
Predicted Functional Partners:
EET48965.1
Conserved hypothetical protein.
 
     0.938
rpoZ
Dna-directed rna polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.922
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.886
EET47071.1
Helix-turn-helix domain containing protein, Fis-type.
    
  0.855
EET47580.1
Cytochrome P450, putative; Identified by match to protein family HMM PF00067.
   
  0.793
EET48752.1
Identified by match to protein family HMM PF00067.
   
  0.793
EET49386.1
Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
   
  0.793
EET46794.1
Putative cytochrome P450 126; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
   
  0.793
EET46581.1
Peroxisomal-coenzyme A synthetase; Identified by match to protein family HMM PF00501.
    
 0.790
EET48942.1
feruloyl-CoA synthetase; Identified by match to protein family HMM PF00501.
    
 0.790
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.