EET49138.1 protein (Thalassobium sp. R2A62) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EET49138.1

Conserved hypothetical protein. (272 aa)

Predicted Functional Partners:

EET46843.1

0.948

EET46875.1

0.814

EET49878.1

0.814

EET48532.1

0.775

EET47729.1

0.774

EET47326.1

0.773

EET48955.1

0.773

EET49529.1

0.772

EET47478.1

0.772

EET49010.1

0.771

Your Current Organism:

Thalassobium sp. R2A62

NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EET46843.1	EET46875.1	TR2A62_2096	TR2A62_2528	EpsK domain protein; Identified by match to protein family HMM PF02485.	Conserved hypothetical protein.	0.767
EET46843.1	EET47326.1	TR2A62_2096	TR2A62_0184	EpsK domain protein; Identified by match to protein family HMM PF02485.	Conserved hypothetical protein.	0.772
EET46843.1	EET47478.1	TR2A62_2096	TR2A62_3312	EpsK domain protein; Identified by match to protein family HMM PF02485.	ATP synthase subunit; Identified by match to protein family HMM PF09458; ATP synthase subunits region ORF 7.	0.768
EET46843.1	EET47729.1	TR2A62_2096	TR2A62_1632	EpsK domain protein; Identified by match to protein family HMM PF02485.	Conserved hypothetical protein.	0.775
EET46843.1	EET48532.1	TR2A62_2096	TR2A62_1294	EpsK domain protein; Identified by match to protein family HMM PF02485.	Conserved hypothetical protein.	0.778
EET46843.1	EET48955.1	TR2A62_2096	TR2A62_2876	EpsK domain protein; Identified by match to protein family HMM PF02485.	Conserved hypothetical protein.	0.775
EET46843.1	EET49010.1	TR2A62_2096	TR2A62_2363	EpsK domain protein; Identified by match to protein family HMM PF02485.	Hemolysin-type calcium-binding region.	0.763
EET46843.1	EET49138.1	TR2A62_2096	TR2A62_2097	EpsK domain protein; Identified by match to protein family HMM PF02485.	Conserved hypothetical protein.	0.948
EET46843.1	EET49878.1	TR2A62_2096	TR2A62_2529	EpsK domain protein; Identified by match to protein family HMM PF02485.	Conserved hypothetical protein.	0.765
EET46875.1	EET46843.1	TR2A62_2528	TR2A62_2096	Conserved hypothetical protein.	EpsK domain protein; Identified by match to protein family HMM PF02485.	0.767
EET46875.1	EET47326.1	TR2A62_2528	TR2A62_0184	Conserved hypothetical protein.	Conserved hypothetical protein.	0.766
EET46875.1	EET47478.1	TR2A62_2528	TR2A62_3312	Conserved hypothetical protein.	ATP synthase subunit; Identified by match to protein family HMM PF09458; ATP synthase subunits region ORF 7.	0.680
EET46875.1	EET47729.1	TR2A62_2528	TR2A62_1632	Conserved hypothetical protein.	Conserved hypothetical protein.	0.742
EET46875.1	EET48532.1	TR2A62_2528	TR2A62_1294	Conserved hypothetical protein.	Conserved hypothetical protein.	0.772
EET46875.1	EET48955.1	TR2A62_2528	TR2A62_2876	Conserved hypothetical protein.	Conserved hypothetical protein.	0.734
EET46875.1	EET49010.1	TR2A62_2528	TR2A62_2363	Conserved hypothetical protein.	Hemolysin-type calcium-binding region.	0.642
EET46875.1	EET49138.1	TR2A62_2528	TR2A62_2097	Conserved hypothetical protein.	Conserved hypothetical protein.	0.814
EET46875.1	EET49529.1	TR2A62_2528	TR2A62_2527	Conserved hypothetical protein.	Identified by match to protein family HMM PF02485.	0.954
EET46875.1	EET49878.1	TR2A62_2528	TR2A62_2529	Conserved hypothetical protein.	Conserved hypothetical protein.	0.556
EET47326.1	EET46843.1	TR2A62_0184	TR2A62_2096	Conserved hypothetical protein.	EpsK domain protein; Identified by match to protein family HMM PF02485.	0.772