Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EET47716.1 | EET47851.1 | TR2A62_2114 | TR2A62_2113 | Chorismate mutase; Identified by match to protein family HMM PF01817; match to protein family HMM TIGR01795. | Acetyltransferase, gnat family; Identified by match to protein family HMM PF00583. | 0.891 |
| EET47716.1 | EET48430.1 | TR2A62_2114 | TR2A62_2116 | Chorismate mutase; Identified by match to protein family HMM PF01817; match to protein family HMM TIGR01795. | Hypothetical protein; Identified by Glimmer3; putative. | 0.601 |
| EET47716.1 | ffh | TR2A62_2114 | TR2A62_2112 | Chorismate mutase; Identified by match to protein family HMM PF01817; match to protein family HMM TIGR01795. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 0.944 |
| EET47716.1 | rimM | TR2A62_2114 | TR2A62_2117 | Chorismate mutase; Identified by match to protein family HMM PF01817; match to protein family HMM TIGR01795. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.767 |
| EET47716.1 | rpsP | TR2A62_2114 | TR2A62_2115 | Chorismate mutase; Identified by match to protein family HMM PF01817; match to protein family HMM TIGR01795. | 30S ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.842 |
| EET47851.1 | EET47716.1 | TR2A62_2113 | TR2A62_2114 | Acetyltransferase, gnat family; Identified by match to protein family HMM PF00583. | Chorismate mutase; Identified by match to protein family HMM PF01817; match to protein family HMM TIGR01795. | 0.891 |
| EET47851.1 | EET48430.1 | TR2A62_2113 | TR2A62_2116 | Acetyltransferase, gnat family; Identified by match to protein family HMM PF00583. | Hypothetical protein; Identified by Glimmer3; putative. | 0.601 |
| EET47851.1 | ffh | TR2A62_2113 | TR2A62_2112 | Acetyltransferase, gnat family; Identified by match to protein family HMM PF00583. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 0.867 |
| EET47851.1 | rimM | TR2A62_2113 | TR2A62_2117 | Acetyltransferase, gnat family; Identified by match to protein family HMM PF00583. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.679 |
| EET47851.1 | rpsP | TR2A62_2113 | TR2A62_2115 | Acetyltransferase, gnat family; Identified by match to protein family HMM PF00583. | 30S ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.843 |
| EET48430.1 | EET47716.1 | TR2A62_2116 | TR2A62_2114 | Hypothetical protein; Identified by Glimmer3; putative. | Chorismate mutase; Identified by match to protein family HMM PF01817; match to protein family HMM TIGR01795. | 0.601 |
| EET48430.1 | EET47851.1 | TR2A62_2116 | TR2A62_2113 | Hypothetical protein; Identified by Glimmer3; putative. | Acetyltransferase, gnat family; Identified by match to protein family HMM PF00583. | 0.601 |
| EET48430.1 | ffh | TR2A62_2116 | TR2A62_2112 | Hypothetical protein; Identified by Glimmer3; putative. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 0.601 |
| EET48430.1 | rimM | TR2A62_2116 | TR2A62_2117 | Hypothetical protein; Identified by Glimmer3; putative. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.773 |
| EET48430.1 | rpsP | TR2A62_2116 | TR2A62_2115 | Hypothetical protein; Identified by Glimmer3; putative. | 30S ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.625 |
| ffh | EET47716.1 | TR2A62_2112 | TR2A62_2114 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | Chorismate mutase; Identified by match to protein family HMM PF01817; match to protein family HMM TIGR01795. | 0.944 |
| ffh | EET47851.1 | TR2A62_2112 | TR2A62_2113 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | Acetyltransferase, gnat family; Identified by match to protein family HMM PF00583. | 0.867 |
| ffh | EET48430.1 | TR2A62_2112 | TR2A62_2116 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | Hypothetical protein; Identified by Glimmer3; putative. | 0.601 |
| ffh | rimM | TR2A62_2112 | TR2A62_2117 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.844 |
| ffh | rpsP | TR2A62_2112 | TR2A62_2115 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 30S ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.995 |
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