EET49757.1 protein (Thalassobium sp. R2A62) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EET49757.1

Hemolysin-type calcium-binding protein; Identified by match to protein family HMM PF00353. (447 aa)

Predicted Functional Partners:

EET48144.1

0.907

EET48320.1

0.881

EET47618.1

0.878

EET48964.1

0.857

EET48702.1

0.833

EET49490.1

0.789

EET49011.1

0.726

EET48443.1

0.706

EET47389.1

0.700

EET46413.1

0.685

Your Current Organism:

Thalassobium sp. R2A62

NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EET46413.1	EET48144.1	TR2A62_2817	TR2A62_0931	Conserved hypothetical protein.	Serralysin; Identified by match to protein family HMM PF00353; match to protein family HMM PF08548.	0.422
EET46413.1	EET49757.1	TR2A62_2817	TR2A62_2145	Conserved hypothetical protein.	Hemolysin-type calcium-binding protein; Identified by match to protein family HMM PF00353.	0.685
EET47389.1	EET48144.1	TR2A62_1214	TR2A62_0931	Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.	Serralysin; Identified by match to protein family HMM PF00353; match to protein family HMM PF08548.	0.758
EET47389.1	EET49011.1	TR2A62_1214	TR2A62_2899	Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.	Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.	0.481
EET47389.1	EET49757.1	TR2A62_1214	TR2A62_2145	Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.	Hemolysin-type calcium-binding protein; Identified by match to protein family HMM PF00353.	0.700
EET47618.1	EET49757.1	TR2A62_1719	TR2A62_2145	Type I secretion target repeat protein.	Hemolysin-type calcium-binding protein; Identified by match to protein family HMM PF00353.	0.878
EET48144.1	EET46413.1	TR2A62_0931	TR2A62_2817	Serralysin; Identified by match to protein family HMM PF00353; match to protein family HMM PF08548.	Conserved hypothetical protein.	0.422
EET48144.1	EET47389.1	TR2A62_0931	TR2A62_1214	Serralysin; Identified by match to protein family HMM PF00353; match to protein family HMM PF08548.	Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.	0.758
EET48144.1	EET48320.1	TR2A62_0931	TR2A62_0237	Serralysin; Identified by match to protein family HMM PF00353; match to protein family HMM PF08548.	Type I secretion target repeat protein.	0.422
EET48144.1	EET48443.1	TR2A62_0931	TR2A62_2900	Serralysin; Identified by match to protein family HMM PF00353; match to protein family HMM PF08548.	Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01842.	0.724
EET48144.1	EET48964.1	TR2A62_0931	TR2A62_1570	Serralysin; Identified by match to protein family HMM PF00353; match to protein family HMM PF08548.	Type I secretion target repeat protein.	0.422
EET48144.1	EET49011.1	TR2A62_0931	TR2A62_2899	Serralysin; Identified by match to protein family HMM PF00353; match to protein family HMM PF08548.	Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.	0.702
EET48144.1	EET49490.1	TR2A62_0931	TR2A62_3290	Serralysin; Identified by match to protein family HMM PF00353; match to protein family HMM PF08548.	Conserved hypothetical protein.	0.422
EET48144.1	EET49757.1	TR2A62_0931	TR2A62_2145	Serralysin; Identified by match to protein family HMM PF00353; match to protein family HMM PF08548.	Hemolysin-type calcium-binding protein; Identified by match to protein family HMM PF00353.	0.907
EET48320.1	EET48144.1	TR2A62_0237	TR2A62_0931	Type I secretion target repeat protein.	Serralysin; Identified by match to protein family HMM PF00353; match to protein family HMM PF08548.	0.422
EET48320.1	EET49757.1	TR2A62_0237	TR2A62_2145	Type I secretion target repeat protein.	Hemolysin-type calcium-binding protein; Identified by match to protein family HMM PF00353.	0.881
EET48443.1	EET48144.1	TR2A62_2900	TR2A62_0931	Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01842.	Serralysin; Identified by match to protein family HMM PF00353; match to protein family HMM PF08548.	0.724
EET48443.1	EET49011.1	TR2A62_2900	TR2A62_2899	Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01842.	Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.	0.973
EET48443.1	EET49757.1	TR2A62_2900	TR2A62_2145	Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01842.	Hemolysin-type calcium-binding protein; Identified by match to protein family HMM PF00353.	0.706
EET48702.1	EET49757.1	TR2A62_1718	TR2A62_2145	Type I secretion target repeat protein.	Hemolysin-type calcium-binding protein; Identified by match to protein family HMM PF00353.	0.833