STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET46363.1Integrase, catalytic region; Identified by match to protein family HMM PF00665. (237 aa)    
Predicted Functional Partners:
EET49792.1
Integrase, catalytic region; Overlaps another CDS with the same product name.
     0.940
EET47071.1
Helix-turn-helix domain containing protein, Fis-type.
 
     0.906
EET48966.1
ISCc3, transposase OrfA; Identified by match to protein family HMM PF01527.
    0.852
EET46899.1
Integrase, catalytic region; Overlaps another CDS with the same product name.
 
     0.746
EET49863.1
Integrase, catalytic region; Overlaps another CDS with the same product name.
 
     0.746
EET48166.1
ISCc3, transposase OrfA.
  
    0.469
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.