STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xdhCXanthine dehydrogenase accessory protein XdhC; Identified by match to protein family HMM PF02625; match to protein family HMM TIGR02964. (299 aa)    
Predicted Functional Partners:
xdhB
Xanthine dehydrogenase, molybdopterin binding subunit; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02965.
  
 0.994
xdhA
Xanthine dehydrogenase, small subunit; Identified by match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450; match to protein family HMM TIGR02963.
 
  
 0.980
EET47089.1
Inner-membrane translocator; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.860
EET47280.1
Bmp family protein; Identified by match to protein family HMM PF02608.
 
     0.838
EET46254.1
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.816
EET49559.1
Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.816
EET48251.1
Molybdopterin dehydrogenase FAD-binding; Identified by match to protein family HMM PF00941.
  
 
 0.753
guaD
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
    0.745
uraH
Hydroxyisourate hydrolase; Identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.724
EET49675.1
Identified by match to protein family HMM PF01522; match to protein family HMM PF09349; match to protein family HMM TIGR03164; match to protein family HMM TIGR03212.
 
  
  0.708
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.