STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET47638.1Saccharopine dehydrogenase. (218 aa)    
Predicted Functional Partners:
EET49237.1
Saccharopine dehydrogenase.
     0.993
EET48332.1
Amino acid adenylation domain protein, putative; Identified by match to protein family HMM PF00975.
  
 
 0.834
EET46797.1
Putative thiol-disulphide oxidoreductase DCC.
       0.794
EET48768.1
Tripartite ATP-independent periplasmic transporter DctQ component; Identified by match to protein family HMM PF04290.
  
     0.496
EET47999.1
Putative long-chain-fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501.
       0.466
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.400
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.