STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET48932.1Rb106; Identified by match to protein family HMM PF00535. (616 aa)    
Predicted Functional Partners:
EET47860.1
Hypothetical protein; Identified by Glimmer3; putative.
 
     0.944
EET49215.1
Hypothetical protein; Identified by Glimmer3; putative.
 
     0.943
glf
UDP-galactopyranose mutase; Identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031.
 
    0.825
EET48129.1
Rb103; Identified by match to protein family HMM PF00535.
 
  
 0.815
EET48513.1
Polysialic acid transport ATP-binding protein KpsT; Identified by match to protein family HMM PF00005.
 
  
 0.680
EET46839.1
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
  
 0.679
EET47649.1
Capsule polysaccharide export protein.
 
     0.631
EET47018.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.602
EET48630.1
Polysaccharide biosynthesis protein CapD; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
  
 
 0.520
EET48662.1
Rb144; Identified by match to protein family HMM PF02397.
  
 
 0.481
Your Current Organism:
Thalassobium sp. R2A62
NCBI taxonomy Id: 633131
Other names: T. sp. R2A62, Thalassiobium sp. R2A62, alpha proteobacterium R2A62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.