STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Olsu_0007Hypothetical protein; KEGG: apv:Apar_1357 transcriptional regulator protein-like protein; SPTR: C2D9I9 Putative uncharacterized protein. (330 aa)    
Predicted Functional Partners:
Olsu_0006
COGs: COG2378 transcriptional regulator protein; KEGG: apv:Apar_1358 hypothetical protein; SPTR: B9CLQ8 Putative uncharacterized protein.
      0.906
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.895
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.584
sigA
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.567
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.567
Olsu_0008
Hypothetical protein; InterPro IPR020392; KEGG: apv:Apar_1356 hypothetical protein; SPTR: C2D9I8 Putative uncharacterized protein.
       0.532
Olsu_0985
RNA polymerase Rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.434
Your Current Organism:
Olsenella uli
NCBI taxonomy Id: 633147
Other names: O. uli DSM 7084, Olsenella uli ATCC 49627, Olsenella uli DSM 7084, Olsenella uli str. DSM 7084, Olsenella uli strain DSM 7084
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