STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Olsu_0511Conserved hypothetical protein; InterPro IPR009081; KEGG: shi:Shel_17180 hypothetical protein; SPTR: C2D863 Acyl carrier protein. (81 aa)    
Predicted Functional Partners:
Olsu_0509
Amino acid adenylation domain protein; COGs: COG1020 Non-ribosomal peptide synthetase modules and related protein; InterPro IPR020845:IPR000873:IPR010071; KEGG: shi:Shel_17200 non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; SPTR: C2D865 Long-chain-fatty-acid--CoA ligase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-binding enzyme; TIGRFAM: amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.960
Olsu_0507
Membrane bound O-acyl transferase MBOAT family protein; COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: shi:Shel_17220 predicted membrane protein involved in D-alanine export; PFAM: membrane bound O-acyl transferase MBOAT family protein; SPTR: C7N756 Predicted membrane protein involved in D-alanine export; PFAM: MBOAT family; Belongs to the membrane-bound acyltransferase family.
 
 
 0.922
Olsu_0510
Orn/DAP/Arg decarboxylase 2; COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183:IPR009006; KEGG: shi:Shel_17190 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: C2D864 Possible diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain.
 
   
 0.877
Olsu_0508
Hypothetical protein; InterPro IPR013830; KEGG: shi:Shel_17210 Y_Y_Y domain-containing protein; SPTR: C2D866 Putative uncharacterized protein.
 
   
 0.837
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.786
Olsu_0197
InterPro IPR017896:IPR017900:IPR001450; KEGG: apv:Apar_0185 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C2D7W3 Putative uncharacterized protein.
  
 0.764
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.757
Olsu_1215
COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845:IPR000873; KEGG: ele:Elen_1793 amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; SPTR: C8WI17 Amino acid adenylation domain protein; PFAM: AMP-binding enzyme; TIGRFAM: amino acid adenylation domain.
 
 
 0.750
Olsu_1580
COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: apv:Apar_1132 ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: C2D964 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.738
Olsu_1216
Membrane bound O-acyl transferase MBOAT family protein; COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: ele:Elen_1792 membrane bound O-acyl transferase MBOAT family protein; PFAM: membrane bound O-acyl transferase MBOAT family protein; SPTR: C8WI16 Membrane bound O-acyl transferase MBOAT family protein; PFAM: MBOAT family; Belongs to the membrane-bound acyltransferase family.
 
 
 0.730
Your Current Organism:
Olsenella uli
NCBI taxonomy Id: 633147
Other names: O. uli DSM 7084, Olsenella uli ATCC 49627, Olsenella uli DSM 7084, Olsenella uli str. DSM 7084, Olsenella uli strain DSM 7084
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