STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Olsu_1069Regulatory protein, FmdB family; COGs: COG2331 conserved hypothetical protein; InterPro IPR013429; KEGG: apv:Apar_0865 regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; SPTR: B9CK42 Regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family. (62 aa)    
Predicted Functional Partners:
Olsu_1068
COGs: COG1564 Thiamine pyrophosphokinase; InterPro IPR007371:IPR006402:IPR006282:IPR005834; KEGG: apv:Apar_0864 thiamine pyrophosphokinase; PFAM: Haloacid dehalogenase domain protein hydrolase; Thiamin pyrophosphokinase catalytic region; SPTR: C2D8V5 Putative uncharacterized protein; TIGRFAM: thiamine pyrophosphokinase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Thiamin pyrophosphokinase, vitamin B1 binding domain; Thiamin pyrophosphokinase, catalytic domain; haloacid dehalogenase-like hydrolase; TIGRFAM: thiamine pyrophosphokinase; haloacid dehalogenase superfamily, sub [...]
       0.540
Your Current Organism:
Olsenella uli
NCBI taxonomy Id: 633147
Other names: O. uli DSM 7084, Olsenella uli ATCC 49627, Olsenella uli DSM 7084, Olsenella uli str. DSM 7084, Olsenella uli strain DSM 7084
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