STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tagg_0311COGs: COG2848 conserved hypothetical protein; KEGG: lip:LI0872 hypothetical protein; SPTR: B8D354 Putative uncharacterized protein; PFAM: Uncharacterized ACR (DUF711). (365 aa)    
Predicted Functional Partners:
Tagg_0312
COGs: COG0078 Ornithine carbamoyltransferase; InterProIPR002082:IPR006130:IPR002292:IPR006132:IPR 006131; KEGG: gem:GM21_3742 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; SPTR: B8D353 Ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase; Belongs to the aspartate/ [...]
       0.605
Tagg_0310
Aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; COGs: COG0078 Ornithine carbamoyltransferase; InterProIPR006130:IPR002082:IPR002292:IPR006132:IPR 006131; KEGG: xca:xccb100_1930 N-acetylornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; SPTR: B8D333 Aspartate/ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine ca [...]
       0.528
Tagg_0306
Protein of unknown function DUF6 transmembrane; InterPro IPR000620; KEGG: nam:NAMH_0581 permeases of the drug/metabolite transporter (DMT) superfamily; PFAM: protein of unknown function DUF6 transmembrane; SPTR: B8D367 Permease of the drug/metabolite transporter (DMT) superfamily; PFAM: EamA-like transporter family.
 
     0.467
Tagg_0313
Oligosaccharyl transferase STT3 subunit; COGs: COG1287 membrane protein required for N-linked glycosylation; InterPro IPR003674:IPR001711; KEGG: similar to integral membrane protein 1; K07151; PFAM: Oligosaccharyl transferase STT3 subunit; SPTR: B8D352 Oligosaccharyl transferase subunit, putative; PFAM: Oligosaccharyl transferase STT3 subunit.
       0.466
Tagg_0308
Radical SAM domain protein; COGs: COG5014 Fe-S oxidoreductase; InterPro IPR007197; KEGG: pca:Pcar_0225 Fe-S oxidoreductase; PFAM: Radical SAM domain protein; SPTR: A3DL36 Radical SAM domain protein; PFAM: Radical SAM superfamily.
 
     0.462
Your Current Organism:
Thermosphaera aggregans
NCBI taxonomy Id: 633148
Other names: T. aggregans DSM 11486, Thermosphaera aggregans DSM 11486, Thermosphaera aggregans M11TL, Thermosphaera aggregans str. DSM 11486, Thermosphaera aggregans strain DSM 11486
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.