STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tagg_0920COGs: COG1489 DNA-binding protein stimulates sugar fermentation; InterPro IPR005224; KEGG: pca:Pcar_2282 sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; SPTR: A3DNG3 Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein; PFAM: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein. (234 aa)    
Predicted Functional Partners:
Tagg_0919
Hypothetical protein; SPTR: B8D5S6 Putative uncharacterized protein.
       0.795
Tagg_0918
Zinc-binding alcohol dehydrogenase family protein; COGs: COG1064 Zn-dependent alcohol dehydrogenase; InterPro IPR013154:IPR013149:IPR014187; KEGG: gsu:GSU0573 alcohol dehydrogenase, zinc-containing; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; SPTR: B8D5S8 Alcohol dehydrogenase, zinc-containing; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES-like domain; TIGRFAM: zinc-binding alcohol dehydrogenase family protein.
     
 0.578
Tagg_0883
HhH-GPD family protein; COGs: COG1194 A/G-specific DNA glycosylase; InterPro IPR000445:IPR003265:IPR003651; KEGG: pmr:PMI0326 adenine DNA glycosylase; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop; SPTR: A1RYX1 HhH-GPD family protein; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif.
 
    0.548
Your Current Organism:
Thermosphaera aggregans
NCBI taxonomy Id: 633148
Other names: T. aggregans DSM 11486, Thermosphaera aggregans DSM 11486, Thermosphaera aggregans M11TL, Thermosphaera aggregans str. DSM 11486, Thermosphaera aggregans strain DSM 11486
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