STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK99546.1PFAM: PhoH family protein; KEGG: pzu:PHZ_c3453 phosphate starvation-inducible protein. (332 aa)    
Predicted Functional Partners:
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
  
 0.971
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
 
   
 0.860
miaB
RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
  
    0.821
fur
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: cak:Caul_0013 ferric uptake regulator family protein; Belongs to the Fur family.
  
    0.680
ADK99550.1
PFAM: peptidase M22 glycoprotease; KEGG: peptidase M22 glycoprotease.
 
     0.650
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.631
ADK99549.1
PFAM: GCN5-related N-acetyltransferase; KEGG: dsh:Dshi_2841 putative ribosomal-protein-alanine acetyltransferase.
  
    0.592
cmk
TIGRFAM: cytidylate kinase; KEGG: ccs:CCNA_03703 cytidylate kinase; PFAM: cytidylate kinase region.
 
    0.490
ADK99543.1
Manually curated; PFAM: helix-turn-helix domain protein; KEGG: pzu:PHZ_c2508 transcriptional regulator, Cro/CI family; SMART: helix-turn-helix domain protein.
       0.460
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
 
  
 0.439
Your Current Organism:
Brevundimonas subvibrioides
NCBI taxonomy Id: 633149
Other names: B. subvibrioides ATCC 15264, Brevundimonas subvibrioides ATCC 15264, Brevundimonas subvibrioides CB81, Brevundimonas subvibrioides DSM 4735, Brevundimonas subvibrioides LMG 14903, Brevundimonas subvibrioides str. ATCC 15264, Brevundimonas subvibrioides strain ATCC 15264
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