SIS60604.1 protein (Roseivivax lentus) - STRING interaction network

Nodes:

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second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

SIS60604.1

MSMEG_0570 family protein. (92 aa)

Predicted Functional Partners:

SIS60541.1

0.959

SIS60554.1

0.955

SIS60569.1

0.955

SIS60587.1

0.955

SIS60618.1

0.951

SIS60530.1

0.915

SIS57785.1

0.840

SIS60517.1

0.792

SIS54518.1

0.717

SIT17041.1

0.694

Your Current Organism:

Roseivivax lentus

NCBI taxonomy Id: 633194
Other names: CCUG 57755, DSM 29430, KCTC 22708, R. lentus, Roseivivax lentus Park et al. 2010, Roseivivax sp. S5-5, strain S5-5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SIS54518.1	SIS60604.1	SAMN05421759_101328	SAMN05421759_101728	2,4-dienoyl-CoA reductase (NADPH2).	MSMEG_0570 family protein.	0.717
SIS54518.1	SIS60618.1	SAMN05421759_101328	SAMN05421759_101729	2,4-dienoyl-CoA reductase (NADPH2).	Putative flavoprotein involved in K+ transport.	0.742
SIS54518.1	SIT17041.1	SAMN05421759_101328	SAMN05421759_12522	2,4-dienoyl-CoA reductase (NADPH2).	anthraniloyl-CoA monooxygenase.	0.676
SIS57785.1	SIS60604.1	SAMN05421759_101532	SAMN05421759_101728	Ca2+-binding protein, EF-hand superfamily.	MSMEG_0570 family protein.	0.840
SIS57785.1	SIS60618.1	SAMN05421759_101532	SAMN05421759_101729	Ca2+-binding protein, EF-hand superfamily.	Putative flavoprotein involved in K+ transport.	0.840
SIS60517.1	SIS60530.1	SAMN05421759_101722	SAMN05421759_101723	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.	MSMEG_0572 family protein.	0.835
SIS60517.1	SIS60541.1	SAMN05421759_101722	SAMN05421759_101724	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.	Aliphatic nitrilase.	0.737
SIS60517.1	SIS60554.1	SAMN05421759_101722	SAMN05421759_101725	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.	Radical SAM protein, MSMEG_0568 family.	0.788
SIS60517.1	SIS60569.1	SAMN05421759_101722	SAMN05421759_101726	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.	Putative N-acetyltransferase, MSMEG_0567 N-terminal domain family.	0.836
SIS60517.1	SIS60587.1	SAMN05421759_101722	SAMN05421759_101727	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.	Hypothetical protein.	0.796
SIS60517.1	SIS60604.1	SAMN05421759_101722	SAMN05421759_101728	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.	MSMEG_0570 family protein.	0.792
SIS60517.1	SIS60618.1	SAMN05421759_101722	SAMN05421759_101729	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.	Putative flavoprotein involved in K+ transport.	0.735
SIS60530.1	SIS60517.1	SAMN05421759_101723	SAMN05421759_101722	MSMEG_0572 family protein.	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.	0.835
SIS60530.1	SIS60541.1	SAMN05421759_101723	SAMN05421759_101724	MSMEG_0572 family protein.	Aliphatic nitrilase.	0.913
SIS60530.1	SIS60554.1	SAMN05421759_101723	SAMN05421759_101725	MSMEG_0572 family protein.	Radical SAM protein, MSMEG_0568 family.	0.924
SIS60530.1	SIS60569.1	SAMN05421759_101723	SAMN05421759_101726	MSMEG_0572 family protein.	Putative N-acetyltransferase, MSMEG_0567 N-terminal domain family.	0.918
SIS60530.1	SIS60587.1	SAMN05421759_101723	SAMN05421759_101727	MSMEG_0572 family protein.	Hypothetical protein.	0.924
SIS60530.1	SIS60604.1	SAMN05421759_101723	SAMN05421759_101728	MSMEG_0572 family protein.	MSMEG_0570 family protein.	0.915
SIS60530.1	SIS60618.1	SAMN05421759_101723	SAMN05421759_101729	MSMEG_0572 family protein.	Putative flavoprotein involved in K+ transport.	0.915
SIS60541.1	SIS60517.1	SAMN05421759_101724	SAMN05421759_101722	Aliphatic nitrilase.	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.	0.737

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Network Stats

number of nodes:

11

number of edges:

23

average node degree:

4.18

avg. local clustering coefficient:

0.59

expected number of edges:

43

PPI enrichment p-value:

1

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

10 of 127

1.65

3.65

2.73e-13

GO:0019538

Protein metabolic process

11 of 541

1.06

1.43

3.98e-10

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

10 of 56

2.01

5.92

7.28e-17

GO:0019843

rRNA binding

8 of 42

2.03

5.03

3.98e-13

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

10 of 64

1.95

5.69

4.48e-17

GO:0015934

Large ribosomal subunit

3 of 8

2.33

2.49

1.59e-05

GO:0005622

Intracellular anatomical structure

11 of 1866

0.52

0.46

3.57e-05

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1952

Structural constituent of ribosome

10 of 43

2.12

6.65

1.18e-17

CL:1956

Structural constituent of ribosome

9 of 37

2.14

6.31

3.46e-16

CL:1957

Structural constituent of ribosome

8 of 27

2.23

6.18

7.50e-15

CL:1959

Structural constituent of ribosome

6 of 22

2.19

4.54

1.51e-10

CL:1989

Mixed, incl. Translation protein SH3-like domain superfamily, and Ribosomal large subunit assembly

3 of 7

2.39

2.35

3.36e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

10 of 63

1.95

5.74

3.79e-17

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 44

1.96

4.03

1.65e-10

GOCC:0015934

Large ribosomal subunit

4 of 7

2.51

3.58

1.40e-07

GOCC:0022625

Cytosolic large ribosomal subunit

2 of 4

2.45

1.54

0.0014

GOCC:0043229

Intracellular organelle

10 of 565

1.0

1.2

6.64e-08

GOCC:0005622

Intracellular

11 of 2147

0.46

0.4

0.00030

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

10 of 65

1.94

5.6

7.79e-17

KW-0699

rRNA-binding

8 of 42

2.03

5.2

1.08e-13

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