STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS67223.1RNA polymerase sigma-70 factor, ECF subfamily. (414 aa)    
Predicted Functional Partners:
SIS67211.1
Uncharacterized conserved protein.
 
     0.951
SIS67230.1
Hypothetical protein.
 
     0.706
SIS84233.1
Transcriptional regulator, ArsR family.
  
     0.592
SIT02043.1
Transcriptional regulator, XRE family.
  
     0.510
SIS96946.1
Transcriptional regulator, HxlR family.
 
     0.494
SIT16401.1
Transcriptional regulator, AraC family.
  
     0.473
SIT11551.1
Calcineurin-like phosphoesterase.
  
     0.428
SIS67204.1
Hypothetical protein.
       0.427
SIS65216.1
Methyltransferase domain-containing protein.
  
     0.415
Your Current Organism:
Roseivivax lentus
NCBI taxonomy Id: 633194
Other names: CCUG 57755, DSM 29430, KCTC 22708, R. lentus, Roseivivax lentus Park et al. 2010, Roseivivax sp. S5-5, strain S5-5
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