Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIS49747.1 | SIS52630.1 | SAMN05421759_10128 | SAMN05421759_101214 | Isochorismate pyruvate lyase. | Prephenate dehydrogenase. | 0.578 |
SIS49747.1 | aroA | SAMN05421759_10128 | SAMN05421759_102430 | Isochorismate pyruvate lyase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.847 |
SIS49747.1 | aroB | SAMN05421759_10128 | SAMN05421759_103265 | Isochorismate pyruvate lyase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.498 |
SIS49747.1 | aroC | SAMN05421759_10128 | SAMN05421759_108154 | Isochorismate pyruvate lyase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.837 |
SIS49747.1 | aroE | SAMN05421759_10128 | SAMN05421759_101123 | Isochorismate pyruvate lyase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.548 |
SIS49747.1 | aroK | SAMN05421759_10128 | SAMN05421759_103264 | Isochorismate pyruvate lyase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.603 |
SIS49747.1 | aroQ | SAMN05421759_10128 | SAMN05421759_10249 | Isochorismate pyruvate lyase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.466 |
SIS49747.1 | cmk | SAMN05421759_10128 | SAMN05421759_102433 | Isochorismate pyruvate lyase. | Cytidylate kinase. | 0.409 |
SIS52630.1 | SIS49747.1 | SAMN05421759_101214 | SAMN05421759_10128 | Prephenate dehydrogenase. | Isochorismate pyruvate lyase. | 0.578 |
SIS52630.1 | SIS84310.1 | SAMN05421759_101214 | SAMN05421759_104236 | Prephenate dehydrogenase. | Chorismate mutase. | 0.931 |
SIS52630.1 | aroA | SAMN05421759_101214 | SAMN05421759_102430 | Prephenate dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.993 |
SIS52630.1 | aroB | SAMN05421759_101214 | SAMN05421759_103265 | Prephenate dehydrogenase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.831 |
SIS52630.1 | aroC | SAMN05421759_101214 | SAMN05421759_108154 | Prephenate dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.946 |
SIS52630.1 | aroE | SAMN05421759_101214 | SAMN05421759_101123 | Prephenate dehydrogenase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.487 |
SIS52630.1 | aroK | SAMN05421759_101214 | SAMN05421759_103264 | Prephenate dehydrogenase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.794 |
SIS52630.1 | aroQ | SAMN05421759_101214 | SAMN05421759_10249 | Prephenate dehydrogenase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.528 |
SIS52630.1 | cmk | SAMN05421759_101214 | SAMN05421759_102433 | Prephenate dehydrogenase. | Cytidylate kinase. | 0.940 |
SIS69568.1 | aroA | SAMN05421759_102432 | SAMN05421759_102430 | Uncharacterized conserved protein. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.775 |
SIS69568.1 | cmk | SAMN05421759_102432 | SAMN05421759_102433 | Uncharacterized conserved protein. | Cytidylate kinase. | 0.664 |
SIS84310.1 | SIS52630.1 | SAMN05421759_104236 | SAMN05421759_101214 | Chorismate mutase. | Prephenate dehydrogenase. | 0.931 |
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