Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIS56316.1 | SIS77390.1 | SAMN05421759_101444 | SAMN05421759_103164 | Metal dependent phosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.512 |
SIS56316.1 | SIS77416.1 | SAMN05421759_101444 | SAMN05421759_103166 | Metal dependent phosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Methylenetetrahydrofolate reductase (NADPH). | 0.456 |
SIS56316.1 | SIS77457.1 | SAMN05421759_101444 | SAMN05421759_103169 | Metal dependent phosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Ppx/GppA phosphatase. | 0.898 |
SIS56316.1 | SIS79034.1 | SAMN05421759_101444 | SAMN05421759_103292 | Metal dependent phosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase. | 0.897 |
SIS56316.1 | aroB | SAMN05421759_101444 | SAMN05421759_103265 | Metal dependent phosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.560 |
SIS77390.1 | SIS56316.1 | SAMN05421759_103164 | SAMN05421759_101444 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Metal dependent phosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.512 |
SIS77390.1 | SIS77416.1 | SAMN05421759_103164 | SAMN05421759_103166 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Methylenetetrahydrofolate reductase (NADPH). | 0.994 |
SIS77390.1 | SIS77430.1 | SAMN05421759_103164 | SAMN05421759_103167 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Virulence factor. | 0.948 |
SIS77390.1 | SIS77444.1 | SAMN05421759_103164 | SAMN05421759_103168 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Hypothetical protein. | 0.412 |
SIS77390.1 | SIS77457.1 | SAMN05421759_103164 | SAMN05421759_103169 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Ppx/GppA phosphatase. | 0.488 |
SIS77390.1 | rlmE | SAMN05421759_103164 | SAMN05421759_103170 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 23S rRNA Um-2552 2'-O-methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.423 |
SIS77416.1 | SIS56316.1 | SAMN05421759_103166 | SAMN05421759_101444 | Methylenetetrahydrofolate reductase (NADPH). | Metal dependent phosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.456 |
SIS77416.1 | SIS77390.1 | SAMN05421759_103166 | SAMN05421759_103164 | Methylenetetrahydrofolate reductase (NADPH). | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.994 |
SIS77416.1 | SIS77430.1 | SAMN05421759_103166 | SAMN05421759_103167 | Methylenetetrahydrofolate reductase (NADPH). | Virulence factor. | 0.953 |
SIS77416.1 | SIS77444.1 | SAMN05421759_103166 | SAMN05421759_103168 | Methylenetetrahydrofolate reductase (NADPH). | Hypothetical protein. | 0.416 |
SIS77416.1 | SIS77457.1 | SAMN05421759_103166 | SAMN05421759_103169 | Methylenetetrahydrofolate reductase (NADPH). | Ppx/GppA phosphatase. | 0.473 |
SIS77416.1 | SIT12640.1 | SAMN05421759_103166 | SAMN05421759_11857 | Methylenetetrahydrofolate reductase (NADPH). | Helix-turn-helix. | 0.666 |
SIS77416.1 | rlmE | SAMN05421759_103166 | SAMN05421759_103170 | Methylenetetrahydrofolate reductase (NADPH). | 23S rRNA Um-2552 2'-O-methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.410 |
SIS77430.1 | SIS77390.1 | SAMN05421759_103167 | SAMN05421759_103164 | Virulence factor. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.948 |
SIS77430.1 | SIS77416.1 | SAMN05421759_103167 | SAMN05421759_103166 | Virulence factor. | Methylenetetrahydrofolate reductase (NADPH). | 0.953 |
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