STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS75420.1TRAP transporter, DctM subunit. (439 aa)    
Predicted Functional Partners:
SIS75397.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
  0.986
SIS75407.1
TRAP-type C4-dicarboxylate transport system, small permease component.
    
  0.975
SIS75451.1
Maleate isomerase.
 
     0.800
SIS75432.1
Carbon-monoxide dehydrogenase large subunit.
       0.773
SIS75440.1
3-(3-hydroxy-phenyl)propionate hydroxylase.
       0.773
SIT14047.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.747
SIS66035.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.716
SIT10871.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.686
SIS64575.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.661
SIS64279.1
C4-dicarboxylate-binding protein DctP.
 
     0.658
Your Current Organism:
Roseivivax lentus
NCBI taxonomy Id: 633194
Other names: CCUG 57755, DSM 29430, KCTC 22708, R. lentus, Roseivivax lentus Park et al. 2010, Roseivivax sp. S5-5, strain S5-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.