STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS99962.14-hydroxyphenylpyruvate dioxygenase. (372 aa)    
Predicted Functional Partners:
SIT04829.1
Homogentisate 1,2-dioxygenase.
 
 0.997
SIS57729.1
Aromatic amino acid aminotransferase apoenzyme.
  
 
 0.961
SIT04841.1
Fumarylacetoacetate hydrolase.
 
  
 0.849
SIS77318.1
methylmalonyl-CoA mutase.
    
 0.845
SIS83355.1
(R)-ethylmalonyl-CoA mutase.
    
 0.845
SIT04118.1
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit.
  
 
  0.841
SIS57978.1
4a-hydroxytetrahydrobiopterin dehydratase.
  
  
 0.811
SIS53454.1
Acyl transferase domain-containing protein.
    
 0.770
SIT04625.1
Predicted amidohydrolase.
   
  0.763
SIS70206.1
3-methylcrotonyl-CoA carboxylase beta subunit.
 
 
 0.756
Your Current Organism:
Roseivivax lentus
NCBI taxonomy Id: 633194
Other names: CCUG 57755, DSM 29430, KCTC 22708, R. lentus, Roseivivax lentus Park et al. 2010, Roseivivax sp. S5-5, strain S5-5
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