STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT07410.1PAP2 superfamily protein. (395 aa)    
Predicted Functional Partners:
SIT07425.1
Hypothetical protein.
 
  
  0.947
SIT07399.1
Transcriptional regulatory protein, C terminal.
 
    0.919
SIS64760.1
Hypothetical protein.
 
  
  0.786
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.768
SIS71085.1
Cytochrome P450.
    
  0.754
SIS76976.1
Cytochrome P450.
    
  0.754
SIT07387.1
Hypothetical protein.
       0.658
SIS65569.1
fatty-acyl-CoA synthase.
    
  0.643
SIS64348.1
malonyl-CoA/methylmalonyl-CoA synthetase.
    
  0.643
SIS64981.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
  0.643
Your Current Organism:
Roseivivax lentus
NCBI taxonomy Id: 633194
Other names: CCUG 57755, DSM 29430, KCTC 22708, R. lentus, Roseivivax lentus Park et al. 2010, Roseivivax sp. S5-5, strain S5-5
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