STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT11709.1RecA-family ATPase. (788 aa)    
Predicted Functional Partners:
SIT11701.1
Hypothetical protein.
 
     0.951
SIT11676.1
Hypothetical protein.
     0.926
SIT11669.1
AAA domain-containing protein.
     0.917
SIT11685.1
Superfamily II DNA or RNA helicase.
 
     0.880
SIT11662.1
Hypothetical protein.
 
     0.861
SIT11716.1
Hypothetical protein.
 
     0.860
SIT11731.1
Hypothetical protein.
 
     0.838
SIT11693.1
Hypothetical protein.
       0.791
SIT11755.1
Protein of unknown function.
  
     0.755
SIT11739.1
DNA modification methylase.
 
     0.747
Your Current Organism:
Roseivivax lentus
NCBI taxonomy Id: 633194
Other names: CCUG 57755, DSM 29430, KCTC 22708, R. lentus, Roseivivax lentus Park et al. 2010, Roseivivax sp. S5-5, strain S5-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.