STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT15335.1Polyhydroxybutyrate depolymerase. (312 aa)    
Predicted Functional Partners:
SIT15326.1
Sulfotransferase family protein.
 
     0.797
SIT15312.1
Acyl transferase domain-containing protein; Belongs to the P-Pant transferase superfamily.
     0.718
SIT15317.1
Polyketide-type polyunsaturated fatty acid synthase PfaA.
 
     0.674
SIT15279.1
Nucleoside-diphosphate-sugar epimerase.
  
     0.668
SIT15293.1
Predicted phosphohydrolase or phosphomutase, AlkP superfamily.
 
     0.622
SIS98584.1
Multidrug resistance efflux pump.
  
     0.577
SIT15358.1
Short-chain dehydrogenase.
  
     0.552
SIT15363.1
Nucleoside-diphosphate-sugar epimerase.
  
     0.532
SIT15270.1
Lipopolysaccharide biosynthesis regulator YciM, contains six TPR domains and a predicted metal-binding C-terminal domain.
  
     0.463
SIS66238.1
Arylsulfatase.
  
     0.418
Your Current Organism:
Roseivivax lentus
NCBI taxonomy Id: 633194
Other names: CCUG 57755, DSM 29430, KCTC 22708, R. lentus, Roseivivax lentus Park et al. 2010, Roseivivax sp. S5-5, strain S5-5
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