Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIT16600.1 | SIT16610.1 | SAMN05421759_12425 | SAMN05421759_12426 | Hypothetical protein. | Hypothetical protein. | 0.997 |
SIT16600.1 | SIT16615.1 | SAMN05421759_12425 | SAMN05421759_12427 | Hypothetical protein. | Hypothetical protein. | 0.986 |
SIT16600.1 | SIT16624.1 | SAMN05421759_12425 | SAMN05421759_12428 | Hypothetical protein. | PglZ domain-containing protein. | 0.979 |
SIT16600.1 | SIT16633.1 | SAMN05421759_12425 | SAMN05421759_12429 | Hypothetical protein. | ATP-dependent Lon protease. | 0.973 |
SIT16600.1 | rplB | SAMN05421759_12425 | SAMN05421759_11579 | Hypothetical protein. | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.942 |
SIT16600.1 | rplE | SAMN05421759_12425 | SAMN05421759_11567 | Hypothetical protein. | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.941 |
SIT16600.1 | rplF | SAMN05421759_12425 | SAMN05421759_11564 | Hypothetical protein. | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.943 |
SIT16600.1 | rplK | SAMN05421759_12425 | SAMN05421759_11867 | Hypothetical protein. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.941 |
SIT16600.1 | rplM | SAMN05421759_12425 | SAMN05421759_10660 | Hypothetical protein. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.945 |
SIT16600.1 | rplR | SAMN05421759_12425 | SAMN05421759_11563 | Hypothetical protein. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.942 |
SIT16610.1 | SIT16600.1 | SAMN05421759_12426 | SAMN05421759_12425 | Hypothetical protein. | Hypothetical protein. | 0.997 |
SIT16610.1 | SIT16615.1 | SAMN05421759_12426 | SAMN05421759_12427 | Hypothetical protein. | Hypothetical protein. | 0.976 |
SIT16610.1 | SIT16624.1 | SAMN05421759_12426 | SAMN05421759_12428 | Hypothetical protein. | PglZ domain-containing protein. | 0.964 |
SIT16610.1 | SIT16633.1 | SAMN05421759_12426 | SAMN05421759_12429 | Hypothetical protein. | ATP-dependent Lon protease. | 0.956 |
SIT16615.1 | SIT16600.1 | SAMN05421759_12427 | SAMN05421759_12425 | Hypothetical protein. | Hypothetical protein. | 0.986 |
SIT16615.1 | SIT16610.1 | SAMN05421759_12427 | SAMN05421759_12426 | Hypothetical protein. | Hypothetical protein. | 0.976 |
SIT16615.1 | SIT16624.1 | SAMN05421759_12427 | SAMN05421759_12428 | Hypothetical protein. | PglZ domain-containing protein. | 0.980 |
SIT16615.1 | SIT16633.1 | SAMN05421759_12427 | SAMN05421759_12429 | Hypothetical protein. | ATP-dependent Lon protease. | 0.975 |
SIT16624.1 | SIT16600.1 | SAMN05421759_12428 | SAMN05421759_12425 | PglZ domain-containing protein. | Hypothetical protein. | 0.979 |
SIT16624.1 | SIT16610.1 | SAMN05421759_12428 | SAMN05421759_12426 | PglZ domain-containing protein. | Hypothetical protein. | 0.964 |
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