SIT17244.1 protein (Roseivivax lentus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SIT17244.1

Two-component system, NarL family, sensor kinase. (497 aa)

Predicted Functional Partners:

SIT17234.1

0.963

SIS88646.1

0.881

SIS75655.1

0.816

SIS71326.1

0.781

SIT03071.1

0.781

SIS66576.1

0.760

SIT14289.1

0.736

SIS53361.1

0.732

SIS70985.1

0.710

SIS88715.1

0.705

Your Current Organism:

Roseivivax lentus

NCBI taxonomy Id: 633194
Other names: CCUG 57755, DSM 29430, KCTC 22708, R. lentus, Roseivivax lentus Park et al. 2010, Roseivivax sp. S5-5, strain S5-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SIS53361.1	SIS70985.1	SAMN05421759_101258	SAMN05421759_102534	Sensor domain CHASE1-containing protein.	Hypothetical protein.	0.859
SIS53361.1	SIS71326.1	SAMN05421759_101258	SAMN05421759_102562	Sensor domain CHASE1-containing protein.	Hypothetical protein.	0.990
SIS53361.1	SIS75655.1	SAMN05421759_101258	SAMN05421759_10330	Sensor domain CHASE1-containing protein.	PAS/PAC sensor hybrid histidine kinase.	0.989
SIS53361.1	SIT03071.1	SAMN05421759_101258	SAMN05421759_1114	Sensor domain CHASE1-containing protein.	Signal transduction histidine kinase.	0.996
SIS53361.1	SIT14289.1	SAMN05421759_101258	SAMN05421759_12042	Sensor domain CHASE1-containing protein.	GAF domain-containing protein.	0.872
SIS53361.1	SIT17234.1	SAMN05421759_101258	SAMN05421759_1263	Sensor domain CHASE1-containing protein.	Two component transcriptional regulator, LuxR family.	0.472
SIS53361.1	SIT17244.1	SAMN05421759_101258	SAMN05421759_1264	Sensor domain CHASE1-containing protein.	Two-component system, NarL family, sensor kinase.	0.732
SIS66576.1	SIS70985.1	SAMN05421759_102185	SAMN05421759_102534	Methyl-accepting chemotaxis protein.	Hypothetical protein.	0.825
SIS66576.1	SIS71326.1	SAMN05421759_102185	SAMN05421759_102562	Methyl-accepting chemotaxis protein.	Hypothetical protein.	0.929
SIS66576.1	SIS75655.1	SAMN05421759_102185	SAMN05421759_10330	Methyl-accepting chemotaxis protein.	PAS/PAC sensor hybrid histidine kinase.	0.945
SIS66576.1	SIS88646.1	SAMN05421759_102185	SAMN05421759_105112	Methyl-accepting chemotaxis protein.	MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.	0.990
SIS66576.1	SIS88715.1	SAMN05421759_102185	SAMN05421759_105118	Methyl-accepting chemotaxis protein.	Methyl-accepting chemotaxis protein.	0.790
SIS66576.1	SIT03071.1	SAMN05421759_102185	SAMN05421759_1114	Methyl-accepting chemotaxis protein.	Signal transduction histidine kinase.	0.929
SIS66576.1	SIT14289.1	SAMN05421759_102185	SAMN05421759_12042	Methyl-accepting chemotaxis protein.	GAF domain-containing protein.	0.880
SIS66576.1	SIT17244.1	SAMN05421759_102185	SAMN05421759_1264	Methyl-accepting chemotaxis protein.	Two-component system, NarL family, sensor kinase.	0.760
SIS70985.1	SIS53361.1	SAMN05421759_102534	SAMN05421759_101258	Hypothetical protein.	Sensor domain CHASE1-containing protein.	0.859
SIS70985.1	SIS66576.1	SAMN05421759_102534	SAMN05421759_102185	Hypothetical protein.	Methyl-accepting chemotaxis protein.	0.825
SIS70985.1	SIS71326.1	SAMN05421759_102534	SAMN05421759_102562	Hypothetical protein.	Hypothetical protein.	0.999
SIS70985.1	SIS75655.1	SAMN05421759_102534	SAMN05421759_10330	Hypothetical protein.	PAS/PAC sensor hybrid histidine kinase.	0.994
SIS70985.1	SIS88646.1	SAMN05421759_102534	SAMN05421759_105112	Hypothetical protein.	MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.	0.801