STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T01_8070Uncharacterized protein. (52 aa)    
Predicted Functional Partners:
PDCD11
Protein RRP5-like protein.
   
 0.949
nop14
Putative nucleolar complex protein 14.
   
 0.939
wdr75
WD repeat-containing protein 75.
   
 0.935
dbe
KRR1 small subunit processome component-like protein.
   
 0.930
UTP14A
U3 small nucleolar RNA-associated protein 14-like protein A.
   
 0.926
UTP15
U3 small nucleolar RNA-associated protein 15-like protein.
   
 0.925
CIRH1A
Cirhin.
   
 0.918
Wdr43
WD repeat-containing protein 43.
   
 0.918
Treh
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.911
WDR36
WD repeat-containing protein 36.
   
 
 0.908
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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