STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Prpf8Pre-mRNA-processing-splicing factor 8. (62 aa)    
Predicted Functional Partners:
Snrnp200
U5 small nuclear ribonucleoprotein helicase.
   
 0.949
EFTUD2
U5 small nuclear ribonucleoprotein component.
   
 0.922
Prpf6
Pre-mRNA-processing factor 6.
   
 0.910
DDX23
Putative ATP-dependent RNA helicase DDX23.
   
 0.907
SmF
Small nuclear ribonucleoprotein F.
   
 0.891
snr-7
Small nuclear ribonucleoprotein G.
   
 0.882
snr-4
Small nuclear ribonucleoprotein Sm D2.
   
 0.879
Snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.876
T01_6192
Uncharacterized protein.
   
 0.874
Txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.867
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.