STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T01_14091Uncharacterized protein. (75 aa)    
Predicted Functional Partners:
Ddx27
Putative ATP-dependent RNA helicase DDX27; Belongs to the DEAD box helicase family.
   
 
 0.468
T01_7684
Pumilio domain-containing protein-like protein.
   
 
 0.458
Ftsj3
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
 
 0.454
C18A3.3
Putative rRNA-processing protein EBP2-like protein.
   
   0.437
brix1
Ribosome biogenesis protein BRX1-like protein.
   
   0.437
WDR3
WD repeat-containing protein 3.
   
   0.435
DDX24
ATP-dependent RNA helicase DDX24.
   
   0.423
Rpf2
Ribosome production factor 2-like protein.
   
   0.422
NOP12
Nucleolar protein 12.
   
   0.417
Rbm28
RNA-binding protein 28.
   
   0.417
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.