Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDK7 | ERCC2 | A0A0V1BRW8 | A0A0V1B7I1 | Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. | TFIIH basal transcription factor complex helicase XPD subunit. | 0.976 |
CDK7 | GTF2E1 | A0A0V1BRW8 | A0A0V1C1Y8 | Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. | General transcription factor IIE subunit 1. | 0.971 |
CDK7 | GTF2E2 | A0A0V1BRW8 | A0A0V1B3K4 | Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. | Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. | 0.974 |
CDK7 | GTF2H3 | A0A0V1BRW8 | A0A0V1BGZ5 | Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. | General transcription factor IIH subunit 3. | 0.988 |
CDK7 | Gtf2h2 | A0A0V1BRW8 | A0A0V1ARQ3 | Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. | General transcription factor IIH subunit. | 0.978 |
CDK7 | Mnat1 | A0A0V1BRW8 | A0A0V1ATV5 | Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. | CDK-activating kinase assembly factor MAT1. | 0.991 |
CDK7 | Rpb4 | A0A0V1BRW8 | A0A0V1B9G3 | Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. | DNA-directed RNA polymerase II 16 kDa polypeptide. | 0.894 |
CDK7 | TfIIA-L | A0A0V1BRW8 | A0A0V1BAN0 | Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. | Transcription initiation factor IIA subunit 1. | 0.759 |
CDK7 | TfIIFalpha | A0A0V1BRW8 | A0A0V1BF82 | Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. | Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. | 0.796 |
CDK7 | hay | A0A0V1BRW8 | A0A0V1B755 | Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. | DNA excision repair protein haywire. | 0.962 |
ERCC2 | CDK7 | A0A0V1B7I1 | A0A0V1BRW8 | TFIIH basal transcription factor complex helicase XPD subunit. | Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. | 0.976 |
ERCC2 | GTF2E1 | A0A0V1B7I1 | A0A0V1C1Y8 | TFIIH basal transcription factor complex helicase XPD subunit. | General transcription factor IIE subunit 1. | 0.976 |
ERCC2 | GTF2E2 | A0A0V1B7I1 | A0A0V1B3K4 | TFIIH basal transcription factor complex helicase XPD subunit. | Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. | 0.974 |
ERCC2 | GTF2H3 | A0A0V1B7I1 | A0A0V1BGZ5 | TFIIH basal transcription factor complex helicase XPD subunit. | General transcription factor IIH subunit 3. | 0.987 |
ERCC2 | Gtf2h2 | A0A0V1B7I1 | A0A0V1ARQ3 | TFIIH basal transcription factor complex helicase XPD subunit. | General transcription factor IIH subunit. | 0.987 |
ERCC2 | Mnat1 | A0A0V1B7I1 | A0A0V1ATV5 | TFIIH basal transcription factor complex helicase XPD subunit. | CDK-activating kinase assembly factor MAT1. | 0.986 |
ERCC2 | Rpb4 | A0A0V1B7I1 | A0A0V1B9G3 | TFIIH basal transcription factor complex helicase XPD subunit. | DNA-directed RNA polymerase II 16 kDa polypeptide. | 0.945 |
ERCC2 | TfIIA-L | A0A0V1B7I1 | A0A0V1BAN0 | TFIIH basal transcription factor complex helicase XPD subunit. | Transcription initiation factor IIA subunit 1. | 0.926 |
ERCC2 | TfIIFalpha | A0A0V1B7I1 | A0A0V1BF82 | TFIIH basal transcription factor complex helicase XPD subunit. | Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. | 0.946 |
ERCC2 | hay | A0A0V1B7I1 | A0A0V1B755 | TFIIH basal transcription factor complex helicase XPD subunit. | DNA excision repair protein haywire. | 0.987 |
page 1 of 6