STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBS4Bardet-Biedl syndrome 4 protein. (1221 aa)    
Predicted Functional Partners:
LEO1
RNA polymerase-associated protein LEO1.
    
 0.985
BBS1
Bardet-Biedl syndrome 1 protein.
   
 0.977
BBS9
Protein PTHB1.
   
 0.976
Ttc8
Tetratricopeptide repeat protein 8.
  
 0.976
Bbs7
Bardet-Biedl syndrome 7-like protein.
  
 0.965
BBS2
Inhibitor of growth protein.
   
 0.963
SLC27A1
Long-chain fatty acid transport protein 1.
   
 0.855
Rab3il1
Guanine nucleotide exchange factor for Rab-3A.
    
 0.703
ND4
NADH-ubiquinone oxidoreductase chain 4.
   
 
 0.673
Ift57
Intraflagellar transport protein 57-like protein.
   
 0.672
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.