STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhbdf1Inactive rhomboid protein 1. (928 aa)    
Predicted Functional Partners:
Mettl23
Methyltransferase-like protein 23.
    
 
 0.461
Lonp1
Lon protease homolog; Belongs to the peptidase S16 family.
     
 0.461
prpsap2
Phosphoribosyl pyrophosphate synthase-associated protein 2.
     
 0.458
Clpb
Caseinolytic peptidase B-like protein.
  
  
 0.429
eif3f
Eukaryotic translation initiation factor 3 subunit F; Belongs to the globin family.
  
  
 0.412
cygb1
Cytoglobin-1; Belongs to the globin family.
   
  
 0.408
KANK2
KN motif and ankyrin repeat domain-containing protein 2.
      
 0.407
Tstd3
Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3.
  
  
 0.407
CLPP
Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial.
   
 
 0.402
timm23
Mitochondrial import inner membrane translocase subunit Tim23.
   
 
 0.402
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.