STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APOA1BPNAD(P)H-hydrate epimerase. (564 aa)    
Predicted Functional Partners:
Dcp2
M7GpppN-mRNA hydrolase.
  
 0.935
cgh-1
ATP-dependent RNA helicase cgh-1; Belongs to the DEAD box helicase family.
   
 0.933
Dcp1a
mRNA-decapping enzyme 1A.
   
 0.932
T01_12150
F-box domain-containing protein.
  
 
 0.869
T01_3460
Uncharacterized protein.
    
 0.811
T01_5961
Ge1_WD40 domain-containing protein.
   
 0.790
Lsm4
U6 snRNA-associated Sm-like protein LSm4.
   
 0.723
LSM14A
Protein LSM14-like protein A.
    
 
 0.647
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.638
XRN1
5'-3' exoribonuclease 1; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.638
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.