STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdhMalate dehydrogenase. (427 aa)    
Predicted Functional Partners:
Fh
Fumarate hydratase, mitochondrial.
    
 0.797
gpt2
Alanine aminotransferase 2.
    
 0.736
CCBL2
Kynurenine--oxoglutarate transaminase 3.
    
 0.736
ilvbl
Acetolactate synthase-like protein; Belongs to the TPP enzyme family.
  
 
 0.730
T01C8.5
Aspartate aminotransferase.
     
 0.727
got2
Aspartate aminotransferase.
     
 0.727
XYLB
Xylulose kinase.
    
 0.725
PCCB
Propionyl-CoA carboxylase beta chain, mitochondrial.
  
 
 0.713
pyc-1
Pyruvate carboxylase 1.
     
 0.697
ACAC
Acetyl-CoA carboxylase.
    
 0.696
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.