STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vps41Vacuolar protein sorting-associated protein 41-like protein. (879 aa)    
Predicted Functional Partners:
Vps11
Vacuolar protein sorting-associated protein 11-like protein.
   
 0.971
VPS39
Vam6/Vps39-like protein.
   
 0.971
VPS16
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
    
 0.969
PEP3
Vacuolar membrane protein pep3.
    
 0.969
VTI1A
Vesicle transport through interaction with t-SNAREs-like protein 1A.
    
 
 0.939
ccz1
Vacuolar fusion protein CCZ1-like protein.
    
 
 0.925
Gripap1
GRIP1-associated protein 1.
    
 
 0.925
Ykt6
Synaptobrevin-like protein YKT6; Belongs to the synaptobrevin family.
    
 
 0.923
Vps33a
Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.886
VPS33B
Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.886
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.